Markdown Navigation MCP Server

Efficiently navigate large markdown files (2,000+ lines) without loading entire documents into context. Reduces token usage by 50-80% when working with documentation, planning files, and technical specifications.

Quick Start

Prerequisites: Universal Ctags and Go 1.21+

# Install ctags
brew install universal-ctags         # macOS
sudo apt install universal-ctags     # Ubuntu/Debian
sudo dnf install universal-ctags     # Fedora

# Build and install
git clone 
cd markdown-mcp
go build -o mdnav-server ./cmd/server
sudo cp mdnav-server /usr/local/bin/

Configure Claude Code (`~/claude.json`):

{
  "mcpServers": {
    "markdown-nav": {
      "command": "mdnav-server"
    }
  }
}

Features

• Zero-configuration: Automatic ctags execution on-demand
• Smart caching: Sub-microsecond responses for repeated queries
• Auto-invalidation: Cache updates when files change
• Selective reading: Load only the sections you need
• Tree navigation: View document structure without reading content
• Pattern matching: Find sections by regex patterns
• Depth control: Limit tree/section depth for focused views

Tools

markdown_tree

Display document structure as tree (ASCII or JSON format).

Key parameters:

• `file_path`: Path to markdown file
• `format`: "ascii" or "json" (default: "json")
• `max_depth`: Limit tree depth 1-6 (default: 2 shows H1+H2)
• `section_name_pattern`: Regex to filter sections

markdown_section_bounds

Get line number boundaries for a specific section.

Key parameters:

• `file_path`: Path to markdown file
• `section_heading`: Exact heading text (without # symbols)

markdown_read_section

Read content from a specific section.

Key parameters:

• `file_path`: Path to markdown file
• `section_heading`: Exact heading text (without # symbols)
• `max_subsection_levels`: Limit subsection depth (omit for all)

markdown_list_sections

List all sections with filters.

Key parameters:

• `file_path`: Path to markdown file
• `max_depth`: Maximum heading level to show (default: 2)
• `section_name_pattern`: Regex to filter section names

Usage Examples

Finding and reading a specific task

User: "Review Task 4 from the planning document"

Claude uses:
1. markdown_tree to see document structure
2. markdown_section_bounds to find Task 4 location
3. markdown_read_section to read only Task 4 content

Result: Complete task analysis using only relevant section (~200 lines instead of 2000)

Discovering documentation sections

User: "What testing strategies are documented?"

Claude uses:
1. markdown_list_sections with pattern="test" to find testing sections
2. markdown_read_section for each relevant section

Result: Comprehensive overview without loading entire document

For more detailed tool usage examples with real output, see examples/EXAMPLES.md.

Configuration

Custom ctags path

If ctags is not in PATH, specify location:

{
  "mcpServers": {
    "markdown-nav": {
      "command": "mdnav-server",
      "args": ["-ctags-path", "/custom/path/to/ctags"]
    }
  }
}

Troubleshooting

"ctags not found in PATH"

• Install Universal Ctags or use `-ctags-path` flag

"section not found"

• Use exact heading text (case-sensitive, no # symbols)
• Run `markdown_list_sections` to see available sections

"no entries found"

• Ensure file has markdown headings (#, ##, ###, ####)
• Verify Universal Ctags (not Exuberant) is installed

Cache issues

• Restart MCP server to clear cache (auto-invalidates on file changes)

Development

For implementation details, architecture, and contributing guidelines, see CLAUDE.md.

Quick development commands:

go test ./...              # Run tests
golangci-lint run         # Lint code
go build ./cmd/server     # Build server

License

This project is licensed under the GNU General Public License v3.0.